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1

Soft bounds on diffusion produce skewed distributions and Gompertz growth

Mandrà, Salvatore, Lagomarsino, Marco Cosentino, Gherardi, Marco

Journal:

Physical Review E

Year:

2014

Language:

english

File:

PDF, 509 KB

english, 2014

2

Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle

Osella, Matteo, Tans, Sander J., Cosentino Lagomarsino, Marco

Journal:

Trends in Microbiology

Year:

2017

Language:

english

File:

PDF, 1020 KB

english, 2017

3

Quantitative Viral Ecology: Dynamics of Viruses and Their Microbial Hosts Quantitative Viral Ecology: Dynamics of Viruses and Their Microbial Hosts , Joshua S. Weitz, Princeton U. Press, 2016, 360 p, $69.95, ISBN 978-0-691-16154-9

Lagomarsino, Marco Cosentino

Journal:

Year:

2017

Language:

english

File:

PDF, 301 KB

english, 2017

4

A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition

Zhang, Qing, Brambilla, Elisa, Li, Rui, Shi, Hualin, Cosentino Lagomarsino, Marco, Sclavi, Bianca, Bulman, Zackery

Journal:

Year:

2020

File:

PDF, 698 KB

2020

5

Cooperativity and hydrodynamic interactions in externally driven semiflexible filaments

I. Llopis, M. Cosentino Lagomarsino, I. Pagonabarraga, C.P. Lowe

Journal:

Computer Physics Communications

Year:

2008

Language:

english

File:

PDF, 172 KB

english, 2008

6

Ordered structure of the transcription network inherited from the yeast whole-genome duplication

Diana Fusco, Luigi Grassi, Bruno Bassetti, Michele Caselle, Marco Cosentino Lagomarsino

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 866 KB

english, 2010

7

Rowers coupled hydrodynamically. Modeling possible mechanisms for the cooperation of cilia

M. Cosentino Lagomarsino, B. Bassetti, P. Jona

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2002

Language:

english

File:

PDF, 246 KB

english, 2002

8

NuST: analysis of the interplay between nucleoid organization and gene expression

Scolari, V. F., Zarei, M., Osella, M., Cosentino Lagomarsino, M.

Journal:

Year:

2012

Language:

english

File:

PDF, 383 KB

english, 2012

9

Horizontal gene transfers as metagenomic gene duplications

Grassi, Luigi, Caselle, Michele, Lercher, Martin J., Lagomarsino, Marco Cosentino

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

10

DnaA and the timing of chromosome replication inEs-cherichia colias a function of growth rate

Matthew AA Grant, Chiara Saggioro, Ulisse Ferrari, Bruno Bassetti, Bianca Sclavi, Marco Cosentino Lagomarsino

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 504 KB

english, 2011

11

A basic swimmer at low Reynolds number

Leoni, Marco, Kotar, Jurij, Bassetti, Bruno, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Year:

2009

Language:

english

File:

PDF, 574 KB

english, 2009

12

Driving Potential and Noise Level Determine the Synchronization State of Hydrodynamically Coupled Oscillators

Bruot, Nicolas, Kotar, Jurij, de Lillo, Filippo, Cosentino Lagomarsino, Marco, Cicuta, Pietro

Journal:

Physical Review Letters

Year:

2012

Language:

english

File:

PDF, 408 KB

english, 2012

13

Gene silencing and large-scale domain structure of the E. coli genome

Zarei, Mina, Sclavi, Bianca, Cosentino Lagomarsino, Marco

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 2.18 MB

english, 2013

14

Growth-rate-dependent dynamics of a bacterial genetic oscillator

Osella, Matteo, Lagomarsino, Marco Cosentino

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 646 KB

english, 2013

15

A model for the self-organization of microtubules driven by molecular motors

B. Bassetti, M. Cosentino Lagomarsino, P. Jona

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2000

Language:

english

File:

PDF, 234 KB

english, 2000

16

Microtubule Organization in Three-Dimensional Confined Geometries: Evaluating the Role of Elasticity Through a Combined In Vitro and Modeling Approach

Lagomarsino, Marco Cosentino, Tanase, Catalin, Vos, Jan W., Emons, Anne Mie C., Mulder, Bela M., Dogterom, Marileen

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

17

Separation of time scales in one-dimensional directed nucleation-growth processes

Pierobon, Paolo, Miné-Hattab, Judith, Cappello, Giovanni, Viovy, Jean-Louis, Lagomarsino, Marco Cosentino

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 228 KB

english, 2010

18

Microfluidic chemostat for measuring single cell dynamics in bacteria

Long, Zhicheng, Nugent, Eileen, Javer, Avelino, Cicuta, Pietro, Sclavi, Bianca, Cosentino Lagomarsino, Marco, Dorfman, Kevin D.

Journal:

Year:

2013

Language:

english

File:

PDF, 908 KB

english, 2013

19

Isotropic–nematic transition of long, thin, hard spherocylinders confined in a quasi-two-dimensional planar geometry

Cosentino Lagomarsino, Marco, Dogterom, Marileen, Dijkstra, Marjolein

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 1.02 MB

english, 2003

20

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Benza, Vincenzo G, Bassetti, Bruno, Dorfman, Kevin D, Scolari, Vittore F, Bromek, Krystyna, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Reports on Progress in Physics

Year:

2012

Language:

english

File:

PDF, 1.75 MB

english, 2012

21

Universal features in the genome-level evolution of protein domains

Marco Cosentino Lagomarsino, Alessandro L Sellerio, Philip D Heijning…

Journal:

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

22

Evidence for soft bounds in Ubuntu package sizes and mammalian body masses

Gherardi, M., Mandra, S., Bassetti, B., Cosentino Lagomarsino, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 827 KB

english, 2013

23

Patterns of synchronization in the hydrodynamic coupling of active colloids

Cicuta, Giovanni M., Onofri, Enrico, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 672 KB

english, 2012

24

Persistent super-diffusive motion of Escherichia coli chromosomal loci

Javer, Avelino, Kuwada, Nathan J., Long, Zhicheng, Benza, Vincenzo G., Dorfman, Kevin D., Wiggins, Paul A., Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 473 KB

english, 2014

25

Functional models for large-scale gene regulation networks: realism and fiction

Lagomarsino, Marco Cosentino, Bassetti, Bruno, Castellani, Gastone, Remondini, Daniel

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 611 KB

english, 2009

26

Identity and divergence of protein domain architectures after the yeast whole-genome duplication event

Grassi, Luigi, Fusco , Diana, Sellerio , Alessandro, Corà, Davide, Bassetti, Bruno, Caselle, Michele, Lagomarsino, Marco Cosentino

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 1.68 MB

english, 2010

27

Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy

Long, Zhicheng, Olliver, Anne, Brambilla, Elisa, Sclavi, Bianca, Lagomarsino, Marco Cosentino, Dorfman, Kevin D.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2014

Language:

english

File:

PDF, 899 KB

english, 2014

28

Hydrodynamically synchronized states in active colloidal arrays

Damet, Loïc, Cicuta, Giovanni M., Kotar, Jurij, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Year:

2012

Language:

english

File:

PDF, 743 KB

english, 2012

29

Speed of evolution in large asexual populations with diminishing returns

Fumagalli, Maria R., Osella, Matteo, Thomen, Philippe, Heslot, Francois, Cosentino Lagomarsino, Marco

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 833 KB

english, 2015

30

Statistical mechanics of the “Chinese restaurant process”: Lack of self-averaging, anomalous finite-size effects, and condensation

Bassetti, Bruno, Zarei, Mina, Cosentino Lagomarsino, Marco, Bianconi, Ginestra

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 106 KB

english, 2009

31

Sedimentation of pairs of hydrodynamically interacting semiflexible filaments

Llopis, I., Pagonabarraga, I., Cosentino Lagomarsino, M., Lowe, C. P.

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 2.32 MB

english, 2007

32

Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains

Angelini, A., Amato, A., Bianconi, G., Bassetti, B., Cosentino Lagomarsino, M.

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 4.39 MB

english, 2010

33

Random networks tossing biased coins

Bassetti, F., Cosentino Lagomarsino, M., Bassetti, B., Jona, P.

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 287 KB

english, 2007

34

Hydrodynamic Induced Deformation and Orientation of a Microscopic Elastic Filament

Cosentino Lagomarsino, M., Pagonabarraga, I., Lowe, C. P.

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 337 KB

english, 2005

35

Accurate simulation dynamics of microscopic filaments using “caterpillar” Oseen hydrodynamics

Bailey, A. G., Lowe, C. P., Pagonabarraga, I., Lagomarsino, M. Cosentino

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 178 KB

english, 2009

36

Metachronal waves for deterministic switching two-state oscillators with hydrodynamic interaction

Lagomarsino, M. Cosentino, Jona, P., Bassetti, B.

Journal:

Physical Review E

Year:

2003

Language:

english

File:

PDF, 501 KB

english, 2003

37

Continuum Description of the Cytoskeleton: Ring Formation in the Cell Cortex

Zumdieck, Alexander, Lagomarsino, Marco Cosentino, Tanase, Catalin, Kruse, Karsten, Mulder, Bela, Dogterom, Marileen, Jülicher, Frank

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 337 KB

english, 2005

38

Feedback topology and XOR-dynamics in Boolean networks with varying input structure

Ciandrini, L., Maffi, C., Motta, A., Bassetti, B., Cosentino Lagomarsino, M.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

39

Minimal two-sphere model of the generation of fluid flow at low Reynolds numbers

Leoni, M., Bassetti, B., Kotar, J., Cicuta, P., Cosentino Lagomarsino, M.

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 221 KB

english, 2010

40

Influence of homology and node age on the growth of protein-protein interaction networks

Bottinelli, Arianna, Bassetti, Bruno, Lagomarsino, Marco Cosentino, Gherardi, Marco

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 739 KB

english, 2012

41

Noise and Synchronization of a Single Active Colloid

Bruot, Nicolas, Damet, Loïc, Kotar, Jurij, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 338 KB

english, 2011

42

Cooperative motion of intrinsic and actuated semiflexible swimmers

Llopis, I., Pagonabarraga, I., Cosentino Lagomarsino, M., Lowe, C. P.

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

43

Single-Molecule Observation of Anomalous Electrohydrodynamic Orientation of Microtubules

van den Heuvel, M. G. L., Bondesan, R., Cosentino Lagomarsino, M., Dekker, C.

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 490 KB

english, 2008

44

Logic Backbone of a Transcription Network

Lagomarsino, M. Cosentino, Jona, P., Bassetti, B.

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 340 KB

english, 2005

45

Exchangeable Random Networks

Bassetti, F., Lagomarsino, M. Cosentino, Mandrà, S.

Journal:

Internet Mathematics

Year:

2007

Language:

english

File:

PDF, 417 KB

english, 2007

46

Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid

Scolari, Vittore F., Cosentino Lagomarsino, Marco

Journal:

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

47

Dynamic membrane patterning, signal localization and polarity in living cells

Zamparo, M., Chianale, F., Tebaldi, C., Cosentino-Lagomarsino, M., Nicodemi, M., Gamba, A.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.90 MB

english, 2015

48

Hydrodynamic synchronization of colloidal oscillators

Kotar, Jurij, Leoni, Marco, Bassetti, Bruno, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.27 MB

english, 2010

49

Cross-species gene-family fluctuations reveal the dynamics of horizontal transfers

Grilli, J., Romano, M., Bassetti, F., Cosentino Lagomarsino, M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

50

Hierarchy and feedback in the evolution of the Escherichia coli transcription network

Cosentino Lagomarsino, M., Jona, P., Bassetti, B., Isambert, H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 1.40 MB

english, 2007

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